FDA Warning Authority: How the Agency Takes Action Against Non-Compliant Manufacturers

FDA Warning Authority: How the Agency Takes Action Against Non-Compliant Manufacturers

The FDA doesn’t just approve drugs and monitor food safety-it actively shuts down companies that break the rules. If you’re manufacturing, importing, or selling FDA-regulated products and you’re cutting corners, you’re already on their radar. Warning letters aren’t reminders. They’re the first step in a legal process that can end in fines, product seizures, or even criminal charges.

What Exactly Is an FDA Warning Letter?

An FDA Warning Letter is a formal notice sent to a company after an inspection or complaint reveals serious violations of the Federal Food, Drug, and Cosmetic Act. It’s not a suggestion. It’s a legal trigger. The letter lists every violation-whether it’s contaminated ingredients, false marketing claims, or failing to follow good manufacturing practices-and gives the company 15 business days to respond with a plan to fix it.

These letters are issued by the Center for Drug Evaluation and Research (CDER) or the Center for Biologics Evaluation and Research (CBER), depending on the product. Since 2023, under Commissioner Robert Califf, the FDA has returned to a 1990s-style enforcement model: issuing hundreds of these letters each year, not dozens. That means if you’re a pharmaceutical company, food producer, or tobacco vendor, you’re far more likely to get one now than you were five years ago.

What Happens After a Warning Letter?

The clock starts ticking the moment the letter is delivered. You have 15 business days to respond. That’s not 15 calendar days. Weekends and federal holidays don’t count. Your response must be detailed: what you did wrong, how you fixed it, and how you’ll prevent it from happening again. A vague answer like “we’re looking into it” won’t cut it.

The FDA doesn’t just read your letter. They verify it. They might send inspectors back-unannounced-to check if your changes are real. If they find your fixes are incomplete, superficial, or just for show, the next step isn’t another warning. It’s escalation.

What Comes After the Warning Letter?

The FDA has a clear ladder of enforcement. After a warning letter, they can:

  • Issue a Notice of Violation (also called an Untitled Letter) for less serious issues
  • Place your product on an Import Alert, meaning it gets automatically detained at the border
  • Launch a mandatory recall if the product poses a health risk
  • Seek a Civil Monetary Penalty of up to $1 million per violation
  • Withdraw approval of your drug or device
  • Pursue criminal charges under Section 303(f) of the FDCA
For example, in 2025, the FDA issued 58 warning letters to compounding pharmacies and telehealth companies selling unauthorized versions of semaglutide and tirzepatide. These were marketed as “custom” weight-loss drugs but were identical to FDA-approved brands-without the safety checks. The FDA didn’t just ask them to stop. They flagged these companies for potential criminal prosecution.

A social media influencer cursed by false health claims is banished by a magical FDA shield.

How the FDA Targets Different Industries

The FDA doesn’t treat all industries the same. Enforcement is targeted and growing in specific areas.

Tobacco: Since 2021, the FDA has issued over 700 warning letters to companies selling unauthorized electronic nicotine delivery systems (ENDS). Many of these were flavored vapes marketed to teens. Even if the product passed lab tests, if it didn’t have premarket authorization, it’s illegal. The FDA is now prioritizing these cases above almost all others.

Food: In 2024, the FDA issued 149 warning letters to human food facilities for violating Current Good Manufacturing Practices (cGMP) and failing to implement Hazard Analysis and Risk-Based Preventive Controls (HARPC) under the Food Safety Modernization Act (FSMA). This isn’t about dirty floors anymore-it’s about failing to analyze risks like allergen cross-contact or pathogen growth during storage.

Pharmaceuticals: Warning letters now come from CDER or CBER directors, not junior reviewers. That change, made in 2024, signals that these letters carry the full weight of the agency. One recent letter to a U.S.-based manufacturer cited “inadequate validation of sterilization processes” and “unapproved changes to drug formulations.” Both are red flags for patient safety.

What Companies Are Getting Hit the Hardest?

The biggest targets in 2025 are:

  • Telehealth companies promoting compounded drugs on social media with before-and-after photos or claims like “miracle weight loss.”
  • Foreign manufacturers refusing unannounced FDA inspections. Since May 2025, the FDA has increased these inspections by 300% and is now detaining entire shipments from non-cooperative facilities.
  • Compounding pharmacies making bulk batches of GLP-1 drugs without individual prescriptions or proper labeling.
  • Supplement sellers claiming their products treat diabetes, cancer, or Alzheimer’s-claims that require FDA approval they don’t have.
One company in Texas was cited for posting Instagram ads showing a customer losing 40 pounds on a compounded tirzepatide product. The FDA didn’t just send a letter-they referred the case to the Department of Justice. The company’s CEO now faces potential jail time.

FDA agents deploy an import alert net over global shipments as compliance blooms into flowers.

How to Avoid Getting a Warning Letter

If you’re in regulated manufacturing, here’s what you need to do:

  1. Know your regulations. For drugs: cGMP. For food: FSMA Preventive Controls. For tobacco: PMTA requirements.
  2. Train your team. Every employee who touches product or documentation needs to understand compliance.
  3. Document everything. If you didn’t write it down, the FDA assumes it didn’t happen.
  4. Don’t ignore inspection notices. Refusing entry or redacting records is a criminal offense.
  5. Don’t rely on “industry norms.” If the FDA says it’s illegal, it’s illegal-even if everyone else is doing it.
A food manufacturer in Ohio avoided a warning letter in early 2025 by proactively fixing a labeling error before the FDA even arrived. They reported it themselves, fixed it within 48 hours, and submitted documentation. The FDA closed the case with a thank-you note.

The Real Cost of Non-Compliance

It’s not just about fines. A single warning letter can destroy your business.

  • Stock prices drop. Investors panic when they see a letter.
  • Customers leave. Retailers won’t carry your product.
  • Suppliers pull out. They fear being dragged into an investigation.
  • Insurance premiums spike. Your liability coverage may be canceled.
  • Employees quit. No one wants to work for a company under federal investigation.
In 2024, a mid-sized supplement company received a warning letter for mislabeling a product as “FDA-approved.” Within six months, they lost 80% of their revenue. They’re still fighting the letter in court.

What’s Changing in 2025-2026?

The FDA’s 2026 budget includes $50 million for more inspectors, better data tools, and expanded authority to conduct unannounced inspections overseas. Foreign facilities that refuse entry will be automatically flagged for import detention.

Also, the FDA is now using AI to scan social media and e-commerce sites for illegal claims. If you’re advertising a drug on TikTok or Amazon, they’re watching. One company was caught in June 2025 because an FDA algorithm flagged a YouTube video showing a “cure for type 2 diabetes” using a compounded product.

The message is clear: the FDA is no longer waiting for complaints. They’re hunting.

Can the FDA shut down a company without a warning letter?

Yes. If a product poses an immediate health risk-like contaminated infant formula or a faulty medical device-the FDA can issue a mandatory recall or seize products without first sending a warning letter. Warning letters are used for violations that are serious but not immediately dangerous. When safety is at stake, the FDA skips the warning and goes straight to enforcement.

Do I need a lawyer if I get a warning letter?

Yes. Warning letters are legal documents with serious consequences. A regulatory attorney can help you craft a response that meets FDA standards, avoid admissions that could lead to criminal liability, and negotiate timelines. Many companies that try to respond on their own end up making errors that trigger further action.

Can I appeal an FDA warning letter?

You can’t appeal the letter itself-it’s not a final decision. But you can respond to it with evidence that the violations were corrected or never occurred. If the FDA disagrees, you can request a meeting with the agency’s Office of Regulatory Affairs. If they still stand by the letter, your only legal recourse is to challenge it in federal court, which is expensive and rare.

What’s the difference between a Warning Letter and an Untitled Letter?

An Untitled Letter is for minor violations, like a typo on a label or an unclear website disclaimer. It’s less formal and doesn’t require a formal response. A Warning Letter is for serious violations that threaten public health-like false claims, contamination, or failing cGMP. It demands a detailed corrective plan within 15 business days and triggers further enforcement if ignored.

Are FDA warning letters public?

Yes. All FDA Warning Letters are posted on the agency’s website within 24 hours of issuance. They’re searchable by company name, product type, and date. Journalists, competitors, and investors monitor these lists closely. A single letter can go viral and damage your brand reputation instantly.

Can I still sell my product after receiving a warning letter?

Technically, yes-unless the FDA issues a recall or import alert. But practically, no. Retailers, distributors, and pharmacies will stop carrying your products. Insurance companies may cancel your coverage. Customers will stop buying. Most companies voluntarily halt sales while they fix the issues to avoid further damage.

Ian McEwan

Hello, my name is Caspian Arcturus, and I am a pharmaceutical expert with a passion for writing. I have dedicated my career to researching and developing new medications to help improve the lives of others. I enjoy sharing my knowledge and insights about various diseases and their treatments through my writing. My goal is to educate and inform people about the latest advancements in the field of pharmaceuticals, and help them better understand the importance of proper medication usage. By doing so, I hope to contribute to the overall well-being of society and make a difference in the lives of those affected by various illnesses.

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